Modelling water fluxes in plants: from tissues to biosphere
Abstract
Summary
Models of plant water fluxes have evolved from studies focussed on understanding the detailed structure and functioning of specific components of the soil–plant–atmosphere (SPA) continuum to architectures often incorporated inside eco-hydrological and terrestrial biosphere (TB) model schemes. We review here the historical evolution of this field, examine the basic structure of a simplified individual-based model of plant water transport, highlight selected applications for specific ecological problems and conclude by examining outstanding issues requiring further improvements in modelling vegetation water fluxes. We particularly emphasise issues related to the scaling from tissue-level traits to individual-based predictions of water transport, the representation of nonlinear and hysteretic behaviour in soil–xylem hydraulics and the need to incorporate knowledge of hydraulics within broader frameworks of plant ecological strategies and their consequences for predicting community demography and dynamics.
I. Introduction
A Tansley review published in the New Phytologist more than 25 years ago (Tyree & Ewers, 1991) set out the fundamental concepts of plant hydraulic architecture of trees and other woody plants (Zimmermann, 1983) and implemented these in a discretized, variable resistance-capacitance model to interpret daily patterns of plant water status. Since then, the quantitative description of water flows in plants has become instrumental in developing eco-hydrological (Williams et al., 1996; Manzoni et al., 2014), dynamic vegetation and terrestrial biosphere (TB) models (Hickler et al., 2006; Bonan et al., 2014; Naudts et al., 2015). Plant hydraulics is contributing directly to the analysis of the effects of global change on plants (Anderegg et al., 2015; Liu et al., 2017) and to studies of the terrestrial water cycle (Pappas et al., 2014; Fatichi et al., 2016; Xu et al., 2016; Anderegg et al., 2018a).
The general objective of this review is to provide an overview of how processes governing water fluxes in plants have been represented in mathematical models of soil–plant–atmosphere (SPA) water transport, with a particular focus on the plant component. Since the review by Tyree & Ewers (1991), theories and concepts relevant for the understanding of water flow in plants have considerably advanced and this progress has shaped how models of plant water flow represent these processes.
The literature on modelling water transport through plants has exploded in the last 2 decades and a complete review of this field is unnecessary (Fatichi et al., 2016; Matheny et al., 2017b). We elected instead to emphasise the existing diversity of approaches at a range of scales to allow a critical comparison of how plant water transport can be modelled and to identify research lines that should be explored in the future to improve modelling of water transport through plants.
We structured the review in a hierarchical fashion to account for the different spatial and temporal scales represented in models (Fig. 1), from those that are primarily focussed on a detailed description of compartments and flows within individual plants (tissue- and plant-centred models), to those representing water flows with a focus on the interactions between rainfall, soil hydrology and climate (synthetically, referred to as eco-hydrological models, either deterministic or using a stochastic approach), to models intended to represent water transport and water status in plants at the community and up to global scales. In many recent TB models, population dynamics modules have been incorporated that depend on ‘functional’ traits, including hydraulic ones (Fisher et al., 2015; Xu et al., 2016). TB models therefore provide opportunities to analyse feedbacks between plant hydraulics, community-level distributions of plant traits, vegetation dynamics and ecosystem and biosphere processes at broad spatial and temporal scales. Explicit representation of water flow inside plants is required to upscale the effects of water availability on individual-level recruitment, growth and mortality mechanistically (Xu et al., 2016; Fisher et al., 2018).

II. A brief history of modelling plant water fluxes
Modern quantitative theories of water transport in plants can be traced back to the early 20th century (Gradmann, 1928, and later van den Honert, 1948), when the concept of soil–plant–atmosphere (SPA) continuum was developed (Cowan, 1965; Philip, 1966; Molz, 1981). One of the first mathematical models describing water flows from the soil to a plant root in unsaturated soil was by Gardner (1960), who built on earlier work (Philip, 1955). The root was modelled as an infinitely long cylinder with constant radius and hydraulic properties. The first soil–plant hydraulic model based on resistance analogues run on a digital computer is possibly the one reported in Cowan (1965). It represented water transport as a network of resistances (impedances) from the soil to the atmosphere and simulated transport during the course of a day and during drying cycles as a function of rooting depth and density. The concepts of water ‘supply function’ and ‘demand function’ were presented, whereby supply limitations were largely determined by soil properties. Water transport through soils was known to show hysteretic behaviour, as the relationship between pressure head and water content was dependent on the history of drying-wetting events, a behaviour thought to be limited to the soil. In addition, the lack of empirical information on actual values of plant hydraulic resistances slowed down progress for many years. During the 1970s and 1980s, improvements were made in representing variable apparent root membrane permeability as a result of transpiration-driven solute drag (Fiscus, 1975), root shrinkage during drought reducing contact with soil (Herkelrath et al., 1977) and a water front moving downward through the soil (Gardner, 1991). Parallel symplasmic and apoplastic pathways were also introduced (Molz, 1976) and later shown to lead to variable root hydraulic conductivity (Steudle, 2000). Hydraulic redistribution among soil layers and nonlinearities in plant axial conductance were not accounted for.
Advances in measuring sap flow, xylem hydraulic conductivity, water storage and stomatal conductance (Jarvis, 1976) led to models representing the links among these variables (Running et al., 1975; Edwards et al., 1986). Discovery of cavitation in xylem conduits (Milburn, 1966) and methods to quantify its effects (Edwards & Jarvis, 1982; Sperry et al., 1988) led to the first models incorporating hydraulic architecture (Tyree, 1988) and later xylem embolism, and therefore nonlinearities in xylem hydraulics (Tyree & Sperry, 1988). Discussions of the likelihood of refilling (Canny, 1997) pointed to the fact that significant hysteresis can occur in the relationships between xylem water potential and conductivity if refilling does not, or is slow to, occur (Sperry et al., 2003). Further important steps were made applying these concepts to make predictions of water and carbon fluxes at the ecosystem scale (Friend, 1995; Williams et al., 1996). Important advances have taken place in (a) constraining biomass allocation and net primary productivity using hydraulic properties and functional balance (Magnani et al., 2000); (b) employing within-day and seasonal variations in water storage and capacitance to predict effects on water fluxes (Loustau et al., 1998) and on growth via measurements of tissue shrinkage and swelling (Steppe et al., 2006); (c) predicting likelihood of drought-induced mortality based on xylem vulnerability to embolism (Martínez-Vilalta et al., 2002); (d) predicting effects of belowground hydraulic redistribution via roots (Lee et al., 2005; Quijano et al., 2012); (e) anticipating vertical root distribution as a function of water table depth, capillary rise and topography (Fan et al., 2017) and water fluxes as a function of rooting depth (Matheny et al., 2017a) and (f) advancing understanding of stomatal behaviour via modelling of water and vapour fluxes in leaves (Peak & Mott, 2011; Rockwell et al., 2014; Buckley, 2015). Moreover, xylem hydraulic properties and their variation with branch order constrain metabolic scaling laws emerging from fractal tree models (West et al., 1999; Savage et al., 2010). As process understanding improved, mathematical approaches to solve the water transport problem also developed, from the first models based on series of point conductances (electrical analogy) (van den Honert, 1948), to those employing the matrix flux potential approach (Kirchhoff transform) to account for continuous variations in water potential along homogenous stem segments (Sperry et al., 1998; Sperry & Love, 2015), to more sophisticated numerical (Bohrer et al., 2005; Janott et al., 2011) and analytical (Couvreur et al., 2018) solutions.
III. Main components of plant water transport models
Ecosystem and TB models have tended in the past to lump plant vascular transport into a single hydraulic resistance term, or ignore plant hydraulics altogether (see reviews by Anderson et al., 2003; Fatichi et al., 2016, for further details). In contrast, water transport and hydraulic architecture have been developed in much detail in several tissue-scale (Arbogast et al., 1993; Schulte & Costa, 1996; Aumann & Ford, 2002; Loepfe et al., 2007) and individual-scale (Cowan, 1965; Sperry et al., 1998; Fruh & Kurth, 1999; Chuang et al., 2006; Hölttä et al., 2009; De Schepper & Steppe, 2010) models of plant vascular transport and water fluxes, some of which are capable of resolving fractal-like hydraulic architecture inside plants (Bohrer et al., 2005) or take advantage of detailed plant architectural measurements (Janott et al., 2011). More recently, hydraulic modules have been included also in models operating at larger spatial and temporal scales. Some models operate at these scales by explicitly representing the many constituent individuals (individual-based), while others use a single, representative average individual (i.e. the ‘big-leaf’ approach) or a ‘cohort-based’ representation. Such hydraulic modules generally need three components: (a) a description of hydraulic traits at the tissue scale (roots, stems, leaves); (b) procedures and associated allometric parameters to scale up tissue-level properties to the whole plant; and (c) procedures linking the scaled-up hydraulic architecture to whole-plant water fluxes. Examples include plant-centred models (Sterck et al., 2011), individual-based eco-hydrological models (e.g. TREES and TFS-Hydro, Mackay et al., 2015; Christoffersen et al., 2016), ‘big-leaf’ ecosystem models (e.g. SPA, Williams et al., 1996) and TB models (Hickler et al., 2006). For models operating at scales larger than the individual plant, there can also be procedures scaling the behaviour of the average individual or the distribution of individuals to the emerging cohort or stand (Christoffersen et al., 2016; Xu et al., 2016; Manoli et al., 2017).
1. Tissue-level hydraulic traits
Extensive lists of plant water relations and hydraulics traits and a discussion of their relevance for modelling of plant water fluxes are given elsewhere (Matheny et al., 2017b; Choat et al., 2018). Tissue-level traits are commonly employed to obtain individual-level hydraulic properties because of the existence of databases containing large collections of empirical information on terminal units of plants, most often from hydraulic studies of detached xylem segments cut from young branches (Choat et al., 2012) and increasingly leaves (Sack & Holbrook, 2006; Bartlett et al., 2012) and roots (Choat et al., 2012). This allows a representation of a number of plant processes that would otherwise be lumped into single parameters of unknown behaviour. Adopting a xylem-centric perspective (justified by current data availability), the ‘minimum’ set of hydraulic traits includes the specific conductivity of the xylem kX,max (at least at one position in the continuum, at some reference state under well-water conditions), the vulnerability to embolism of these tissue-level segments (e.g. water potential at 50%, ψX,50; at 12% and 88% loss of hydraulic conductivity ψX,12 and ψX,88; slope of vulnerability curves) and, at least, the maximum stomatal conductance of leaves gS,max. Defining this minimum set is an active area of research, as it implies a hypothesis over the dominant axes of variation of hydraulic behaviour in plants, over which there is little consensus. Other traits can be introduced to increase model realism and generality at the expense of complexity, that is the hydraulic vulnerability, capacitance and/or water storage of leaves (Martin-StPaul et al., 2017); the ratio between root area and leaf area (Sperry et al., 1998); phloem capacitance (Zweifel et al., 2005; De Schepper & Steppe, 2011; Pfautsch et al., 2015) or xylem capacitance (Hölttä et al., 2009); the minimum leaf cuticular conductance (Martin-StPaul et al., 2017); the relationships between stomatal conductance, whole-leaf conductance and canopy conductance (Mallick et al., 2016); and the vulnerability to cavitation in separate organs (roots, stems, leaves) (Sperry & Love, 2015).
Leaving aside issues related to environmental heterogeneity in a canopy, scaling these traits to individual plants also requires a statement of how properties measured in terminal units relate to the same properties measured elsewhere in the plant.
2. Scaling-up procedures from tissues to whole plants
Water fluxes and stomatal conductance are whole-plant variables controlled by whole-plant architecture and physiology, hence tissue-level traits need to be scaled to individual level. Scaling-up from tissue to plant requires robust procedures to work out whole-plant conductance and whole-plant vulnerability curves (Sperry & Love, 2015; Couvreur et al., 2018), such that variability in traits across plant organs are accounted for. Mathematically, the problem can be addressed (Savage et al., 2010; Sperry & Love, 2015; Sperry et al., 2017; Couvreur et al., 2018), but the limited amount of information on vertical variation in hydraulic traits, whole-plant architecture and allometry (with a few exceptions) currently limits advances in this direction. By contrast, vertical variation in anatomical traits related to hydraulics has been studied (especially conduit diameter, e.g. Olson et al., 2018), but comparative work linking these patterns to hydraulic performance is scant.
Scaling of tissue-level conductivity to whole-plant conductance can be done at a minimum using an Ohm's law analogy, that is: gplant = AXkX/H, where gplant and H are the hydraulic conductance of a plant from root surface to sites of evaporation and plant height (taken as surrogate of path length), respectively, while AX and kX refer to measurements of sapwood area and hydraulic conductivity per unit sapwood area at some reference location (Whitehead & Jarvis, 1981; Sterck et al., 2011). More complex schemes may include corrections for conduit furcation and conduit tapering vertically within a plant to minimize the height effect inherent in the inverse relationship employed in the equation for gplant (West et al., 1999; Savage et al., 2010; Christoffersen et al., 2016).
Extra-xylary conductances are generally not incorporated in measures of whole-plant conductance, even though extra-xylary resistances in roots and leaves account for a very large, sometimes dominant, fraction of whole-plant hydraulic resistance (Fiscus, 1975; Sack & Holbrook, 2006; Sack & Scoffoni, 2013). Additionally, the behaviour of leaf and root hydraulics with respect to plant water potential can be highly nonlinear and hysteretic.
Different assumptions have been proposed to scale up the ratios of sapwood area to leaf area (Huber values, HV) from single segments to plants, communities and grid cells. At the plant scale, the simplest assumption is that plants behave entirely as pipe models, that is that the HV of an apical segment is conserved downward along the plant branching architecture (Shinozaki et al., 1964; Savage et al., 2010). As an alternative, Murray's hypothesis of energy consumption minimization can be adopted (McCulloh et al., 2003). Few data are available to test these hypotheses across species. A reasonable assumption (supported by the findings given in Supporting Information Notes S1; Fig. S1) is that Huber values can vary across species but are conserved along the heights of a tree. This conclusion is consistent with the finding that, within individuals, the sums of stem cross-sectional areas are also broadly conserved across branching levels (Nikinmaa, 1992; van der Sande et al., 2015). Developing larger datasets of the variability of HV and stem cross-sectional areas within trees is a priority to allow scaling HV from branches to trees.
Procedures to scale up curves of vulnerability to embolism within plants are not well established. Modelling (Hölttä et al., 2011) analyses suggest that a vertically varying profile of ψX,50 (more negative ψX,50 values attained towards the top of the tree) may be realistic, consistent with the hypothesis of hydraulic vulnerability segmentation (see review of available data and theory in Couvreur et al., 2018). However, some empirical reports contradict this hypothesis (Wason et al., 2018), despite general trends for narrower conduits in leaves vs stems/roots. When data are available separately for roots, stems and leaves of a species, a segmented profile can be employed, with homogeneous parameterization along the lengths of these organs (Sperry & Love, 2015).
Finally, plant water potentials also vary systematically from roots to leaves. Discretized modelling of axial resistances (Hölttä et al., 2006) can approximate these vertical profiles, but these schemes may be computationally expensive for large models. Alternatively, the Kirchhoff integral transform can be used. The Kirchhoff transform accounts for variable conductivity, resulting from fluxes associated with internal water potential gradients in a medium with homogenous properties. Cowan (1965) is credited as the first to employ the Kirchhoff transform in a model of water flow in soils towards the root (Van Lier et al., 2009). The ‘water supply’ curve described above (Sperry et al., 1998; Sperry & Love, 2015) assumes that there are enough conduits and pores between conduits to approximate the xylem medium as continuous – this amounts to assuming short conduits in a long stem, or highly discretized segments. Depending on its configuration, the Kirchhoff transform can also be computationally expensive.
Whatever approaches are chosen to estimate individual-level properties, scaling these traits to all plants in a community or a grid cell requires knowledge of the probability density functions (PDF) of additional variables, such as the stand level, plant functional type (PFT) or pixel-level Huber values (ratio of conducting sapwood to subtended leaf area), tree heights, plant sapwood volumes (for traits related to capacitance), leaf areas (to upscale leaf traits) and root abundance and distribution with depth (cf. sections ‘Stand-scale water fluxes and coupling to climate and soil’ and ‘Water fluxes in terrestrial biosphere models and feedbacks to community dynamics’).
3. Links between hydraulics, stomatal conductance and photosynthesis
With regard to the links between scaled-up traits and stomatal behaviour, plant and eco-hydrological models have often represented stomatal conductance without any direct feedback from the hydraulic system, even when components of plant hydraulics were included. As a partial exception, the model SPA (Williams et al., 1996; Fisher et al., 2006; Bonan et al., 2014) was built upon earlier work (Jones & Sutherland, 1991; Tardieu & Davies, 1993) and coupled the maximization of carbon gains as a function of stomatal opening with the use of a threshold for stomatal closure at a critical water potential. Other models instead derive stomatal conductance from some modification of the Cowan & Farquhar (1977) marginal water use model (e.g. for two TB models, Kala et al., 2015; Knauer et al., 2015). Effects of soil drought on stomatal conductance are approximated using a sigmoid function of soil (reviewed in Smith et al., 2014; Rogers et al., 2017) or plant water availability (e.g. leaf water potential, Tuzet et al., 2003). Finally, attempts have been made to combine demand limitations from the marginal water use model with the supply (‘hydraulic’) and other nonstomatal limitations (Manzoni et al., 2013; Novick et al., 2016; Dewar et al., 2018), using optimization principles to incorporate feedbacks between hydraulic and photosynthetic traits (Table 1).
Model | Optimization principle | Optimization criterion | Optimization conditions | Relevant temporal scale | Relevant spatial scale | Fitting parameters |
---|---|---|---|---|---|---|
Cowan & Farquhar (1977) | Constrained maximization of gains | Max(A(gS) − λ E(gS)) |
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Daily or longer | Stomata | λ |
Manzoni et al. (2013) | Constrained maximization of gains | Max(![]() |
|
Daily to dry-down | Stomata and soil-root conductance (stand-scale) | None |
Novick et al. (2016) | Constrained maximization of gains | Max(A(ΨL) − λ′ E(ΨL)) |
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Daily or longer | Stomata and xylem | λ’ |
Dewar et al. (2018): CAP model | Maximization of gains | Max(A(gS, Vc,max(ΨL))) |
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Sub-daily to dry-down | Stomata and xylem (const. conductance) | None |
Dewar et al. (2018): MES model | Maximization of gains | Max(A(gS, gm(ΨL))) |
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Sub-daily to dry-down | Stomata and xylem (const. conductance) | None |
Prentice et al. (2014) | Minimisation of summed costs of two substrates | Min(E/A + Vc,max/A) |
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Months to years | Stomata and xylem | ε |
Wolf et al. (2016); Anderegg et al. (2018b) | Maximum difference between gains and shadow costs | Max(A − Θ(ΨL)) |
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Instantaneous | Stomata and xylem | a, b of Θ(ΨL) |
Sperry et al. (2017); Eller et al. (2018a) | Maximum difference between gains and hydraulic risk | Max(A′ − Θ(ΨL)) |
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Instantaneous | Stomata and xylem | None |
Huang et al. (2018) | Maximum transport of assimilates away from loading phloem | Max(A2(ΨL) − A(ΨL)) |
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Daily or longer | Stomata, xylem and phloem | None |
- The table lists the optimization principle and criterion employed, the resulting optimization conditions, the temporal and spatial scales over which the optimality condition applies and if empirical parameters need to be obtained by fitting the model against field data. The first model in the list (Cowan & Farquhar, 1977) does not include hydraulic traits, but it is given nonetheless because of its historical significance. A, photosynthetic rate; E, transpiration rate; gS, stomatal conductance; Θ, shadow cost function; ΨL, leaf water potential; A′, relative photosynthetic rate; Amax, maximum photosynthesis at the point of critical water potential; Kmax, maximum hydraulic conductance; FE, export rate of sucrose from leaf phloem loading zone; ci/ca, ratio of intercellular to ambient CO2 concentration; D′, vapour pressure deficit; k, effective Michaelis−Menten constant for Rubisco; a, b, ε, λ, λ′, fitting parameters; CAP, model accounting for reductions in carboxylation capacity (Vc,max) at low water potential; MES, model accounting for reduction of mesophyll conductance (gm) at low water potential.
The Prentice et al. (2014) model follows the microeconomic principle that plants minimise a summed cost function of substitutable resources (here, water and nutrients) to obtain a unit product. The cost function is the minimum of the summed unit maintenance costs for carboxylation capacity and the transpiration pathway over some finite time interval (months to years) per unit of photosynthates. Substitution between long-term investments in photosynthesis vs hydraulics may thus be cost neutral. In the Sperry et al. (2017) model, plants maximise the difference between relative photosynthetic gains and relative hydraulic risk (both on a 0–1 scale). These values are normalised relative to the maximum achievable photosynthetic rates (not capacity) and the hydraulic potential at the downstream end of the flow pathway (in principle, the leaf). The solution to this maximization problem is that the marginal (i.e. per unit of canopy pressure change) normalised carbon gain equals the marginal normalised hydraulic risk of losing conductance by embolisation, that is, an instantaneous optimisation criterion, instead of a time-integrated one. Here, the maximum achievable photosynthetic rate is calculated at the critical maximum canopy pressure (most negative water potential) where canopy desiccation occurs, which implies that the maximum achievable photosynthetic rate will itself decline during drought. The model by Wolf et al. (2016) is similar to the one by Sperry et al. (2017) in the use of an instantaneous time scale and a maximization criterion based on the difference between gains and costs (risks). The main difference is that in this approach (cf. Anderegg et al., 2018b), costs and gains are not normalised and the ‘shadow’ cost only depends upon leaf water potential (parabolic with a minimum at leaf water potential ψL→0), leaving unspecified whether it is determined by the instantaneous risk of conductance losses, osmotic adjustment, foregone photosynthetic production or phloem transport costs. Other costs (e.g. nonstomatal limitations, xylem conduit rebuilding, photosynthetic and/or hydraulic acclimation) are only indirectly accounted for in these approaches, by the fit to the observed water potential regulation of stomatal conductance during drought. Finally, Huang et al. (2018) developed ideas by Hölttä et al. (2017) to incorporate a stomatal optimization scheme accounting for both xylem and phloem transport limitations. In this approach, low water potentials limit stomatal aperture twice, that is, via losses of xylem hydraulic conductance and via reduced phloem competition for xylem water, reducing sucrose transport out of the leaves during droughts (via reduced phloem turgor). The main advantage of optimality approaches is that many fitted parameters are substituted by (in principle) measurable hydraulic (xylem and phloem) and photosynthetic traits, although some calibration is often still required (cf. Table 1). Incorporating belowground hydraulics currently requires either empirical calibration or the setting of empirical coefficients.
4. Summary
Overall, understanding of the main biological scaling patterns related to the biophysics of water transport is still incomplete. However, mechanistic modelling of plant hydraulics over timescales much longer than a few hours and spatial scales larger than a single plant is now possible. Major progress has been made in modelling lags in water transport processes (i.e. between soil and xylem, between xylem and leaves, in stomatal aperture), for example, by using porous-media models to represent water fluxes, while conserving mass (Bohrer et al., 2005; Christoffersen et al., 2016; Mirfenderesgi et al., 2016), as opposed to classic resistance/capacitor models (cf. discussion in Chuang et al., 2006). These temporal lags in plant fluxes and water status caused by storage can also lead to hysteretic behaviour, but this is qualitatively different from the processes mentioned before, which are caused instead by changes in soil properties (water content/conductivity relationship) or plant traits (hydraulic conductivity/xylem water potential relationship) in response to the environment.
IV. Stand-scale water fluxes and coupling to climate and soil
1. Water and carbon fluxes
We discuss here one approach to describe long-term mean plant water fluxes at the stand-scale by means of a stochastic model. This approach builds on the tissue- and plant-scale models described in the previous sections, and extends the predictions of water fluxes to account for variable environmental conditions at the stand-scale. The main motivation is to assess the statistical properties of water fluxes rather than simulating the outcome of a specific time series of environmental conditions. Also, by explicitly linking a minimal description of plant hydraulic properties to dynamic changes in soil moisture, this modelling approach bridges the gap between plant physiological and hydrologic models. Other models provide a more realistic description of soil–plant–atmosphere couplings (Tardieu & Davies, 1993; Launiainen et al., 2011; Schymanski et al., 2013; Fatichi et al., 2016; Huang et al., 2017; Feng et al., 2018), but require extensive numerical experiments. The minimal approach presented here is based on a simple SPA continuum model that couples daily water fluxes to variable soil water availability and atmospheric conditions (Fig. 2a,b). Daily values are then scaled-up in time by accounting for randomness in rainfall occurrences (Fig. 2c,d). While details are reported elsewhere (Rodriguez-Iturbe & Porporato, 2005; Manzoni et al., 2014; Vico et al., 2017), a short description is provided here (cf. Notes S2).

Water transport from the soil to the leaves is driven by water potential differences through a series of conductances (soil-root and root-leaf), as described in previous sections. Each conductance is characterized by tissue-level properties that are scaled-up to the stand-scale multiplying them by the corresponding tissue area per unit ground area – for example, sapwood and leaf-area indices. The root-leaf conductance can be expressed as in section ‘Scaling-up procedures from tissues to whole plants’ in which the sapwood area-specific conductivity may be reduced by cavitation as the xylem water potential decreases. The xylem water potential is conservatively approximated by the leaf ψL, consistent with using cavitation curves typically measured in terminal twigs, so that xylem vulnerability curves are denoted by kX(ψL) (Fig. 2a). Evaporation from the stomatal cavity is driven by the vapour pressure deficit (VPD) around the leaf (assuming a well coupled canopy and that air in the stomatal cavity is saturated), and mediated by stomatal conductance (Hari et al., 1986), which is in turn expressed as a function of leaf water potential (equal to leaf pressure when gravity is neglected), gS(ψL) (Fig. 2a). Linking stomatal conductance to leaf water potential allows capturing stomatal closure due to increasing VPD, which causes higher transpiration rates and thus lowers ψL, or decreasing soil moisture, which also lowers ψL at a given transpiration rate. While the risk-gain stomatal optimization theory (Wolf et al., 2016; Sperry et al., 2017) could apply here (cf. section ‘Links between hydraulics, stomatal conductance and photosynthesis’), and kX(ψL) and gS(ψL) relations are in general sigmoidal, a simple piecewise linear function gS(ψL) is adopted for analytical tractability (Manzoni et al., 2014). The maximum xylem conductivity and maximum stomatal conductance are denoted by kX,max and gS,max, whereas the water potential levels at 50% loss of xylem conductivity and at 50% stomatal closure are denoted as before by ψX,5o (equivalent to P50) and ψS,5o (Fig. 2a).
Using the relations kX(ψL) and gS(ψL) it is possible to respectively calculate the water flow from the soil to the leaves (c. kX(ψL) × (ψS − ψL), representing the water supply) and the transpiration rate (c. gS (ψL) × VPD, representing the atmospheric water demand). Because the relations kX(ψL) and gS(ψL) are specified (Fig. 2a), by equating water demand and supply, the leaf water potential (the only unknown) can be obtained. Finally, knowledge of ψL allows finding an explicit relation between transpiration rate and soil water potential (and thereby soil moisture), tissue-level hydraulic conductances, sapwood- and leaf-area indices, and soil properties (Fig. 2a,b). While in this example only water fluxes are calculated, a stand-level carbon balance can be coupled to the water fluxes to calculate net primary productivity and assess trade-offs among water use strategies. This would require accounting for limiting factors such as CO2, light, temperature, and nutrients, and for carbon allocation patterns.
This minimal representation of water transport in plants allows for full analytical tractability, but rests on the assumptions that plant water storage, the effect of gravity, and the temporal variability of environmental conditions other than rainfall and soil moisture can be neglected. The first assumption is reasonable especially at the daily time scale and under moist conditions, while the second one especially so for relatively short plants, but even in that case the progressive development of cavitation along the hydraulic pathway cannot be captured (Couvreur et al., 2018). Xylem vulnerability and stomatal closure curves are assumed static and piecewise linear functions of leaf water potential. This assumption implies that ψX,50, ψS,50, kX,max and gS,max are treated as invariant ‘traits’. A more mechanistic approach would instead consider these curves as outcomes of the underlying dynamics of xylem cavitation and refilling, and compound stomatal responses to VPD and soil drying (Tardieu & Davies, 1993; Buckley et al., 2003). When piecewise linear kX(ψL) and gS(ψL) re used, ψL is obtained analytically, otherwise a numerical scheme can be implemented, to avoid underestimating the sensitivity of xylem conductivity and stomatal conductance to changes in water potential. Finally, carry-over effects of cavitation events due to incomplete xylem refilling are not captured (Feng et al., 2018).
2. Coupling to climatic conditions
Once whole-plant properties are predicted via a suitable scaling scheme from the tissue-level traits, they can be coupled to descriptors of site climatic conditions. Scaled-up hydraulic models describing leaf-to-canopy gas exchanges, plant growth, primary productivity, and crop yields are confronted with environmental variability occurring at virtually all temporal and spatial scales (Katul et al., 2007). Numerical approaches employ observed time trajectories of all the relevant variables to drive process-based or empirical sub-models of plant exchanges and growth (Launiainen et al., 2011; Schymanski et al., 2013). While measured time series are realistic drivers of modelled plant processes, they are also limited to the duration of the measurement period and, therefore, might not represent the full spectrum of possible variations, especially extreme but rare events. Treating environmental drivers as stochastic variables addresses this limitation by accounting in a more complete way for the intermittent and unpredictable nature of environmental variability (Cowan, 1986; Rodriguez-Iturbe & Porporato, 2005; Katul et al., 2007). These approaches provide a representation of the mean and variability in plant processes that is particularly suitable to address the question ‘How does variability in environmental conditions (water availability in particular) translate into variability in plant and ecosystem processes?’
Several coupled soil–plant stochastic models have been proposed to investigate the propagation of soil moisture fluctuations on long-term mean transpiration and plant water stress (Rodriguez-Iturbe & Porporato, 2005), optimality in the responses of stomatal conductance (Cowan, 1986; Mäkelä et al., 1996), leaf phenology (Vico et al., 2017) and rooting depth (Guswa, 2010), the emergence of functional trait coordination (Manzoni et al., 2014), and competition dynamics (Farrior et al., 2015). All these models are based on comparable stochastic approaches once the relations between the fluxes (i.e. water) and the environmental conditions (soil moisture) of interest are obtained (Fig. 2a,b, in our case as described in section ‘Water and carbon fluxes’).
Daily gas exchange rates vary because of the random dynamics of soil moisture. Rainfall events replenish the soil moisture pool, but the timing and rain depths are random (Fig. 2c). Therefore, to calculate the growing season transpiration and net primary productivity, such randomness needs to be accounted for using a stochastic soil moisture balance, yielding PDFs of water and carbon fluxes. As a result, the mean growing season fluxes depend on the statistical properties of rainfall events.
Therefore, altering the statistical properties of rainfall allows exploring how mean and variability of transpiration rate and net primary productivity change along spatial transects (statistics change in space) and through time due to climatic shifts (statistics change in time, Fig. 2d). With this approach, long-term shifts in the statistical properties of gas exchange rates are quantified via a set of closed-form equations for the water balance (in particular transpiration, E) and net primary productivity, parameterized based on the daily scale fluxes. In this way, the effects of plant traits on the long-term patterns of transpiration and productivity under different climatic regimes are assessed analytically (Fig. 3).

The insight offered by this approach lies in exploring how plant traits and rainfall statistical properties not only co-determine the long-term mean transpiration rate <E>, but also how the sensitivity of each on <E> is modulated by the other. Fig. 3 illustrates these points. The long-term mean transpiration rate <E> was calculated to illustrate how plant hydraulic traits and rainfall statistical properties affect this key component of the hydrologic cycle and proxy of several plant functions. The model was parameterized for a uniform tree stand (Table S1; Fig. 3). The <E> is shown as a function of two parameter groups that represent the relative sensitivity and efficiency of water loss through the stomata relative to transport in the xylem: the ratio between water potential at 50% stomatal closure and at 50% loss of xylem conductivity (ψS,50 : ψX,50, Fig. 3a) and the ratio between maximum stomatal conductance and saturated sapwood hydraulic conductivity (gS,max : kX,max, Fig. 3b), respectively.
Fig. 3(a) shows that the <E> of a uniform stand increases as the two water potential levels at 50% loss of water transport capacity approach each other. This pattern is due to more effective use of water by plants that coordinate stomatal closure and loss of xylem conductivity (Manzoni et al., 2014). As rainfall frequency is decreased (from solid to dotted curves), the <E> decreases due to more limiting water availability, and the maximum <E> allowed by the available water is attained over a wider range of hydraulic trait combinations, suggesting that multiple strategies may yield comparable fitness (Feng et al., 2017). In Fig. 3(b), <E> increases as the maximum stomatal conductance increases with respect to the maximum sapwood conductivity, suggesting that plants with higher water transport capacity use water more efficiently. Note that no trade-offs between transport capacity and resistance to cavitation are implemented in this version of the model, so there is no physiological disadvantage in using water more intensively, except the fact that soil moisture is depleted faster, leading to reduced canopy gas exchanges. As in Fig. 3(a), changes in rainfall patterns affect <E> and tend to decrease its sensitivity to hydraulic traits, except for plants with extremely low ratios of stomatal conductance over sapwood conductivity.
When the plant carbon balance is also coupled to transpiration and soil moisture dynamics, it becomes possible to assess which hydraulic trait combinations yield highest fitness in a stochastic environment (e.g. in terms of mean growth rate). For example, results from a similar stochastic model show that different leaf phenological strategies (which control seasonal fluctuations in the Huber value) provide a competitive advantage depending on rainfall statistics (Vico et al., 2017). Drought-deciduous species are predicted to have a fitness advantage and be resistant to invasion when the wet seasons are short, whereas evergreen species are favoured by long wet seasons. At intermediate wet season lengths, however, evergreen species can invade drought-deciduous communities, because of their more efficient water use. It is useful to contrast this approach to the modelling of drought-deciduousness against the approach taken across the semi-deciduous tropics in one TB model (Xu et al., 2016). The statistical approach presented here and in Vico et al. (2017) stresses hydraulic trait diversity and covariation among traits to facilitate understanding of the ecological strategies governing spatial patterns and dynamics of drought deciduousness. In the example of the TB model (Xu et al., 2016), relationships are prescribed by an a priori covariance matrix linking the traits across a diversity of PFTs and predictions of forest seasonality are tested against remotely sensed observations of canopy greenness.
V. Water fluxes in terrestrial biosphere models and feedbacks to community dynamics
TB models are the de facto platform for incorporating an ever-increasing range of plant–climate interactions into global climate models, including plant hydraulics (Hickler et al., 2006; Bonan et al., 2014). These developments can help improve representations of moisture limitations to ecosystem fluxes (gross and net primary productivity; evapotranspiration rate), phenology (LAI) and likelihood of drought-induced mortality in the basic spatial units of a TB model, that is the pixels composing the spatial grid of the modelled terrestrial biosphere.
Some TB models (Fisher et al., 2015, 2018; Weng et al. 2015) have recently co-opted a demographic approach (Moorcroft et al., 2001) for modelling sub-grid heterogeneity, distinct from the classic ‘big-leaf’ approach. As the name suggests, big-leaf models treat the entire canopy as if it were a single big leaf, averaging plant traits as they vary both vertically and horizontally through the canopy before calculating fluxes. In contrast, ‘vegetation demographic models’ (sensu Fisher et al., 2018; hereafter VDMs) calculate fluxes for each cohort (a group of similarly-sized individuals of the same PFT) before averaging to the canopy. The key distinction between these two approaches as they relate to the modelling of plant hydraulics lies in plant size. While big-leaf models can account for different PFTs, they must average traits of individuals of different sizes within a PFT before estimating fluxes. Because plant height is such a ubiquitous driver of whole-plant hydraulic function (Mencuccini, 2003; Savage et al., 2010; Olson et al., 2018), and plant hydraulic processes are nonlinear, the demographic approach opens up new possibilities for models seeking to capture these nonlinear size-dependent effects of drought (and moisture more generally) on ecosystems.
Within this demographic framework, capturing nonlinear size- and trait-dependent effects of drought is accomplished by incorporating individual-scale plant hydraulic processes following the approaches outlined in section ‘Main components of plant water transport models’. Such hydraulically enabled VDMs (hereafter ‘hydro-VDMs’), while in a nascent stage, are particularly attractive because they possess the capability of modelling hydraulic trait-mediated environmental filtering, in which climate ‘filters out’ PFTs in either spatial or temporal gradients of climate, based on their hydraulic traits. The previous section emphasized how ecosystem-level fluxes (but not vegetation dynamics) might change in response to hydraulic traits and shifts in the statistical properties of climate in space or time (see Figs 2, 3). Here we highlight how hydro-VDMs can be used in the opposite direction, forecasting shifts in ecosystem-level hydraulic trait distributions in space and time, which in turn modulate ecosystem response to further climatic change.
1. Hydraulic filters operate at short timescales at the individual scale, VDMs handle the propagation
The working hypothesis expressed here (Fig. 4) is that plant hydraulic traits are key filters operating at short timescales at the individual scale, but, when integrated over time or space, have long-term or large-scale consequences for ecosystem function. Hydro-VDMs are a useful tool to explore the long-term and large-scale consequences of these demographic feedbacks.

Consider two PFTs competing for space and resources in a grid cell. One PFT has a greater capacitance but a shallower root distribution, whereas the other has less capacitance but a deeper root distribution. In terms of growth and overall C gain, capacitance correlates with an enhanced ability to respond to high-frequency light variation (Meinzer et al., 2008), hence, the competitive outcome between these two PFTs requires modelling the hourly timescale and integrating growth responses to annual timescales. The outcome is also contingent on the co-location of roots and favourable soil moisture in the soil profile. This is one among many possible contrasting trait combinations, in which competitive exclusion or coexistence can arise contingent on the outcome of processes affected by high-frequency variation in environmental drivers (Powell et al., 2018). A similar argument can be made that prediction of drought-induced mortality and seedling survival (Fig. 4) have similar requirements of representing both short and long timescales. Hydro-VDMs translate fast-timescale processes into differential rates of resource acquisition and mortality among PFTs by (1) integrating fast-timescale net carbon gain to a daily timescale while tracking percent loss of conductivity (PLC) at the individual scale, (2) updating plant size respecting allometric constraints, (3) modelling resource acquisition as a function of plant size (tree height, leaf and crown area, rooting density and distribution), and mortality as a function of carbon and hydraulic status. Seed production is linked to individual carbon status and population density. Hence, growth, mortality, and recruitment all depend on the interaction between climate and hydraulic traits, generating a feedback between community composition and biospheric water fluxes.
The utility of explicitly representing the diversity of hydraulic traits across PFTs in a grid cell has been stressed before (Xu et al., 2016). The challenge posed by this approach is in parameterizing these traits into a realistic yet tractable number of PFTs for simulations at large spatiotemporal scales. Defining what constitutes ‘realistic’ for the number and type of hydraulically-defined PFTs is fundamentally an ecological question (sensu Grime, 1979; Tilman, 1988), requiring delineation of both distinct drought survival strategies and the suites of plant traits which comprise them (Mursinna et al., 2018; cf. discussion in Section ‘Main components of plant water transport models’). Going hand-in-hand with this challenge is the computational expense necessary to account for uncertainty in the degree of such trait coordination, often requiring ensemble simulations (Fisher et al., 2010).
2. Natural experiments for evaluating models of trait-based filtering at large scales
Hydraulic trait filtering is the process hypothesized to be behind spatial patterns of species distributions across moisture gradients in Panama (Engelbrecht et al., 2007), the Malay-Thai peninsula (Baltzer et al., 2008), and at small spatial scales along the ridge-to-valley continuum in Amazonia (Oliveira et al., 2019). While advances in incorporating trait diversity into VDMs have been made, approaches to date must prescribe trait diversity (Sakschewski et al., 2016), rather than allowing it to emerge via simulated filtering. Quite possibly the most stringent benchmark for hydro-VDMs is to predict the divergent hydraulic trait distributions in space in these ‘natural’ experiments. Such spatial patterns may be used to estimate the potential impact of climate change on ecosystems, assuming space-for-time substitution is valid. At the global scale, we can contrast biomes in terms of their ‘reserve hydraulic diversity’ to accommodate climate shifts by recruiting new dominant hydraulic traits into the population. Ever-wet tropical biomes and low-diversity systems (e.g. boreal forests, some Mediterranean systems) may be particularly vulnerable to shifts in the statistical properties of environmental conditions (particularly, the return interval for mortality-inducing droughts). This high vulnerability emerges not necessarily because drought-induced mortality could be greater in these biomes, but because there is reduced likelihood for more drought-resistant taxa to preferentially recruit and become dominant because of the relatively constrained distributions of hydraulic traits exhibited in these systems. More diverse biomes have greater ‘reserve hydraulic diversity’ (e.g. seasonally evergreen and dry tropical forests, savannahs, some Mediterranean ecosystems, fynbos), and thus may be more resilient, consistent with recent findings demonstrating the role of community-level hydraulic trait diversity in buffering ecosystem drought sensitivity, albeit at short (daily) timescales (Anderegg et al., 2018a).
VI. Outstanding challenges in modelling water fluxes in the soil–plant–atmosphere continuum
1. Data availability vs model complexity
Ultimately, lack of sufficient high-quality data will remain the most important limiting factor for the adequate parameterization of water transport processes at large scales. Fundamental uncertainties on the occurrence and frequency of basic physiological processes (e.g. refilling) will continue to challenge modellers. Especially for TB models based on representing PFTs, representing the inherent variability of hydraulic strategies that are likely to occur within any one pixel will remain a challenge. Partly as a consequence of lack of data, it is also unclear how many axes of hydraulic variation should be represented in models, an issue that strongly constrains how models are structured. Work focussed on developing sound and easily applied hydraulic protocols remains a priority to remove a bottleneck for rapid data collection.
2. Scaling of tissue-level traits to the individual and the community
Some approaches (Bohrer et al., 2005; Janott et al., 2011) can resolve the differences in plant hydraulic architecture responsible for nonlinearities at the plant scale, but it is presently unclear how much detail is required to achieve consistent unbiased predictions at larger spatial scales. Details of fractal-like hydraulic architecture often need to be sacrificed to keep computational costs low (Mirfenderesgi et al., 2016). While porous-media models have improved the realism of representation of hydraulics, the linkage of sapwood capacitance to the underlying traits via pressure-volume theory (turgor loss point, elastic modulus) has seldom been made (Christoffersen et al., 2016). Phloem capacitance (Pfautsch et al., 2015) is generally neglected in ecosystem and TB models, but phloem to xylem area ratios increase dramatically in twigs (Hölttä et al., 2013). Because theory to interpret phloem diameter shrinkage is available (Mencuccini et al., 2017), the assumption of negligible phloem capacitance should be revisited. The availability of global databases of sap flow (Poyatos et al., 2016) provides opportunities to calculate in vivo whole-system hydraulic properties using plant water potentials. Although this may appear as a step back to the use of ‘apparent’ pathway resistances/capacitances (Whitehead & Jarvis, 1981), the cross-checking of tissue-level traits and whole-plant traits may provide new avenues to investigate the robustness and generality of the tissue-to-plant scaling, the occurrence of potential bottlenecks in the pathway and whole-system vulnerability to environmental conditions or disturbance events. New empirical datasets of within-plant scaling of hydraulic properties (vulnerability curves, Huber values) will be valuable for hypothesis testing. Development of community-level distributions of hydraulic traits will shed light on the environmental and ecological controls of hydraulic trait distributions across diverse communities.
3. The memory of past drought events in the soil–plant continuum
At the root–soil interface, the traditional root shrinkage model (Herkelrath et al., 1977) has recently been resuscitated thanks to a better understanding of the potential role of root hairs and root-derived mucilage with pectin-like behaviour (Carminati et al., 2009; Carminati, 2012). In the plant xylem pathway, cavitation fatigue (Hacke et al., 2001) contributes to building a memory of past droughts. The current debate on the likelihood of xylem refilling has renewed emphasis on the hydraulic significance of xylem growth. Tissue growth depends on turgor potential (Hsiao et al., 1976) while growth produces new xylem conduits. Yet, the feedbacks between water status, xylem growth and its hydraulic consequences have not been examined (cf. Coussement et al., 2018; Eller et al., 2018b). Exploring the existence of trade-offs between plant hydraulics and xylem growth strategies will be a fruitful research and modelling avenue. Finally, distinguishing between evolutionary stable drought deciduousness and defoliation leading to drought-induced mortality is already a major avenue for hydraulic modelling research.
4. Representation of nonxylary resistances in leaves and roots
The lack of leaf/root extra-xylary resistances remains a major weakness of current hydraulic models. This weakness is explained partly by the lack of extensive databases and partly by the limitations in our understanding of how certain leaf/root extra-xylary (e.g. apoplastic, symplastic, gaseous) pathways may respond to the environment. Leaf hydraulic vulnerability curves relate well to leaf turgor loss points (Nardini & Luglio, 2014) and a significant fraction of this increase in resistance during droughts occurs outside of the xylem (Scoffoni et al., 2011; Sack et al., 2016). Representing root/leaf extra-xylary conductance in models may provide a flexible way to include a greater proportion of total whole-plant resistance, give a better handling of the responses to severe drought past the point of turgor loss as well as include a relatively rapid stress recovery mechanism.
5. Links between hydraulic traits and other dimensions of whole-plant ecological strategies
Modelling of hydraulic transport must consider the integration of hydraulic traits within broader plant ecological spectra (Reich, 2014). Some models integrate water with light limitations (Sterck et al., 2011; Mackay et al., 2015) and many of the instantaneous stomatal optimality approaches mentioned above predict a direct coordination between diffusive conductances, photosynthetic capacity, xylem and/or phloem transport properties, consistent with much earlier literature. However, the integration of hydraulic traits within a broader trait framework still remains to be tested with a quantitative model, something more easily done when community-level trait PDFs are explicitly modelled across competing individuals (Christoffersen et al., 2016). Similarly, very little work has been done to document how hydraulic properties jointly acclimate with other traits to long-term changes in environment (Domec et al., 2017).
6. Thresholds for drought-induced mortality
There is currently a debate as to whether ‘hard’ hydraulic thresholds linked to mortality can be identified and what their values might be (Choat et al., 2018). This discussion can be advanced by integrating mechanistic analyses of hydraulic failure with exploration of trait coordination and long-term xylem–phloem–canopy plasticity (Manzoni et al., 2014; Mackay et al., 2015; Mencuccini et al., 2015). Some authors have proposed that conservation of cellular water content, in addition to plant water potential, may help define thresholds for mortality (e.g. discussion in supplementary data in Bartlett et al., 2012). This avenue has merit in drawing attention to a complementary variable which may also scale with remote sensing products normalised within a daily cycle (Konings & Gentine, 2017). Expressing plant water status and fluxes in terms of both tissue water content and water potential is consistent with early modelling (Edwards et al., 1986; Tyree, 1988) and current porous-media modelling.
Acknowledgements
MM acknowledges support from the Spanish Ministry of Economy and Competitiveness via competitive grants CGL2013-46808-R (FUN2FUN) and CGL2017-89149-C2-1-R (DRESS). SM acknowledges support from the Swedish Research Council Formas (2016-00998) and discussions within the NIMBioS working group ‘A DEB model for Trees’. BC acknowledges sponsorship by the Laboratory Directed Research and Development Program Project 8872 of Oak Ridge National Laboratory, managed by UT-Battelle, LLC, for the U. S. Department of Energy. We acknowledge the valuable inputs from four reviewers and the subject editor Owen Atkin, whose comments considerably improved the manuscript.